PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024145.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 258aa    MW: 28972.8 Da    PI: 5.8696
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024145.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.52.7e-55821861102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql +fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  CCG024145.1  82 QLLMFWTNQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 179
                  6889****988889************************************************************************************ PP

        NF-YC  96 vprdelk 102
                  +prdelk
  CCG024145.1 180 IPRDELK 186
                  ****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-3460176IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-3796168IPR009072Histone-fold
PfamPF008082.2E-21104167IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDQSQQTRQQ QSQQQPVVAG AGQMAYASTP YQTAPLVASG TPSIAIPSST QSPATFSNSP  60
HQLTYQQAQH FHHQQQQQQQ QQLLMFWTNQ MQEIEQTTDF KNHSLPLARI KKIMKADEDV  120
RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII  180
PRDELKEEGL GVTKATIPVG PPADLPYYYV PQHPVGPPGM IMGKPVDQAA AYEAQQPQPP  240
VALMPWLQTQ PQQQQSDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-428318219119HapE
4g92_C2e-428318219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145980.0AC214598.1 Populus trichocarpa clone POP052-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008715.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008716.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008717.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008718.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008719.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008720.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011008721.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG74e-81NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLB9HGM50.0B9HGM5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s07830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-81nuclear factor Y, subunit C2